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COLLECTION 01 / Organize the lab

Lab Software.

Compare systems for recording work, managing samples, and keeping a team in sync.

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Where to start

Start with the job: record experiments, track inventory, or coordinate a team. Before moving lab records, test how the tool handles exports, permissions, and handover.

Tools in this collection

42 EDITORIAL LISTINGS

eLabFTW

Keep experiment notes, attachments, and shared lab records in a searchable browser workspace.

Lab SoftwareSelf-hosted web app

Benchling Notebook

Capture experiments in shared notebook pages and standardize repeated entries with lab templates.

Lab SoftwareHosted web app

Labguru

Connect experiment records, sample inventory, and equipment information in one lab workspace.

Lab SoftwareHosted web app

SciNote

Organize lab work into projects, experiments, and tasks, with shared notebook entries and inventory records.

Lab SoftwareHosted web app

RSpace

Connect a collaborative lab notebook to sample records and research data already stored elsewhere.

Lab SoftwareWeb app

protocols.io

Maintain versioned research methods and share an updated reference with colleagues or readers.

Lab SoftwareHosted web app

LabArchives ELN for Research

Keep searchable research notes, files, and shared notebook pages in a managed service.

Lab SoftwareHosted web app

Quartzy

Keep an inventory of lab supplies and track requests, approvals, and orders in a shared workspace.

Lab SoftwareHosted web app

SciSure ELN

Record experimental work in a shared notebook with templates, attachments, and references to inventory.

Lab SoftwareHosted web app

LabCollector

Catalog samples, supplies, and equipment in configurable laboratory records.

Lab SoftwareWeb app

Labstep

Organize experimental records, shared methods, and inventory in a project workspace.

Lab SoftwareHosted web app

LabWare LIMS

Track laboratory samples, work assignments, review steps, and results through configured workflows.

Lab SoftwareEnterprise platform

LabVantage LIMS

Manage sample and test records in a browser-based laboratory information system.

Lab SoftwareEnterprise platform

Agilent SLIMS

Use a connected notebook and sample-management system to organize lab work and results.

Lab SoftwareEnterprise platform

Sapio LIMS

Build lab workflows that link sample records, task queues, and results.

Lab SoftwareEnterprise platform

LabKey Server Community Edition

Organize research datasets and collaborate around structured, permission-controlled records.

Lab SoftwareSelf-hosted web app

openBIS

Connect lab records and research datasets in a structured repository with project-level organization.

Lab SoftwareWeb app

SENAITE

Track sample reception, work queues, results, and review in a configurable LIMS.

Lab SoftwareSelf-hosted web app

OpenSpecimen

Track research specimens, aliquots, storage locations, and distributions.

Lab SoftwareWeb app

Freezerworks

Locate samples and aliquots in configured freezer layouts and manage inventory records.

Lab SoftwareLaboratory software

LabCup

Centralize laboratory inventories, storage locations, and shared equipment records.

Lab SoftwareHosted web app

Specify 7

Catalog biodiversity specimens, collection events, and associated records in a shared database.

Lab SoftwareWeb app

Agilent iLab

Coordinate core facility requests and equipment schedules in a common booking system.

Lab SoftwareHosted web app

QReserve

Make shared resources discoverable and manage reservations with local booking rules.

Lab SoftwareHosted web app

Calira

Schedule shared laboratory equipment and organize related lab operations in a common portal.

Lab SoftwareHosted web app

Calpendo

Book shared facility resources with configurable project rules and approvals.

Lab SoftwareHosted web app

LibreBooking

Give teams a browser calendar for reserving shared rooms, equipment, or other resources.

Lab SoftwareSelf-hosted web app

Meeting Room Booking System

Reserve meeting and instrument rooms in an uncomplicated shared calendar.

Lab SoftwareSelf-hosted web app

The Dataverse Project

Build a research data repository with dataset versions, metadata, and citations.

Lab SoftwareSelf-hosted web app

InvenioRDM

Deploy a configurable research repository for datasets, publications, and related records.

Lab SoftwareSelf-hosted web app

Zenodo

Deposit research outputs in a public repository and obtain a persistent identifier for released records.

Lab SoftwareHosted repository

Open Science Framework

Organize study materials, files, collaborators, and registrations in a research project workspace.

Lab SoftwareHosted web app

DataLad

Track dataset history and retrieve large file contents only when they are needed.

Lab SoftwareCommand-line tool

Data Version Control

Version data and record pipeline stages alongside the Git history for an analysis project.

Lab SoftwareCommand-line tool

Globus

Transfer and synchronize large research files between configured storage collections.

Lab SoftwareHosted service

REDCap

Build structured research data capture forms with validation and exports.

Lab SoftwareInstitutional web app

JupyterLab

Work with notebooks, files, terminals, and data views in a browser-based analysis environment.

Lab SoftwareNotebook environment

Quarto

Render research notes and code into reports, presentations, books, or websites.

Lab SoftwareCommand-line publishing tool

Snakemake

Run file-based analysis pipelines by declaring how each output depends on inputs and commands.

Lab SoftwareWorkflow engine

Nextflow

Describe data-processing steps and run the same workflow on supported local or remote computing backends.

Lab SoftwareWorkflow engine

renv

Record and restore a project-specific set of R package versions.

Lab SoftwareR package