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Single-cell Analysis / R package

zellkonverter

Exchange H5AD expression data between Python's AnnData format and Bioconductor's SingleCellExperiment class.

Best fit

Teams moving single-cell measurements and metadata between R and Python.

What you need

R and Bioconductor; some conversion methods use a managed Python environment.

What to check

Custom layers and metadata may not survive every conversion. Compare dimensions and identifiers after transfer.