Single-cell Analysis / R package
scrapper
Use R interfaces to compiled routines for single-cell quality control, clustering, and marker summaries.
Best fit
Bioconductor users building modular workflows around existing expression objects.
What you need
R, a compatible Bioconductor release, and the assay and metadata needed for the chosen operation.
What to check
The operations have separate inputs and tuning requirements. The package does not choose thresholds for a study.