Bioimage Analysis / Python package / QuPath extension
InstanSeg
Run pretrained instance segmentation models on fluorescence or brightfield microscopy images to delineate cells and nuclei.
Best fit
Teams comparing cell or nuclear masks on microscopy and tissue slides.
What you need
A compatible Python and PyTorch environment, or the separately documented QuPath integration; choose the model for your modality.
What to check
Output quality depends on stain, sampling resolution, and model choice. Inspect masks before exporting measurements.