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Bioimage Analysis / Fiji plugin

CLIJ2

Run filtering, labeling, and measurement operations on an OpenCL-compatible GPU from Fiji workflows.

Best fit

Analysts who want to accelerate repeated operations on microscopy stacks while staying in ImageJ.

What you need

Fiji with the CLIJ2 update site enabled, an OpenCL-capable device and working drivers.

What to check

GPU memory limits the volume that can be handled at once, and moving data between host and GPU adds overhead.